PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G016800.1
Common NameB456_001G016800, LOC105797158
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 192aa    MW: 20800.1 Da    PI: 4.6275
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G016800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-181666155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s++kGVr +k +g+Wv+eIr p   + +  r++lg+++tae+Aa+a +aa  +l+g
  Gorai.001G016800.1 16 SRFKGVRKRK-WGKWVSEIRLP---N-CrERIWLGSYDTAEKAARAFDAALFCLRG 66
                        789****999.**********8...3.45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-201676IPR016177DNA-binding domain
CDDcd000181.58E-301676No hitNo description
PfamPF008473.3E-111666IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-291775IPR001471AP2/ERF domain
SMARTSM003805.4E-341780IPR001471AP2/ERF domain
PROSITE profilePS5103221.9041774IPR001471AP2/ERF domain
PRINTSPR003671.3E-91829IPR001471AP2/ERF domain
PRINTSPR003671.3E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVKHLSEKSA VETSDSRFKG VRKRKWGKWV SEIRLPNCRE RIWLGSYDTA EKAARAFDAA  60
LFCLRGRSAK FNFPDNPPEI AGGTSLSPHE IQAAAARFAN SEPSTIHSEQ TDSAFQMESP  120
SPSVSDATVQ FDGSAMDLLT MGSGNGVSDY GIFPGFDDFS SDVLGSSMLN IGGEDENFDG  180
ILIPGSFLWN F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482583.11e-140PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-58ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D2QIX11e-140A0A0D2QIX1_G
STRINGPOPTR_0006s14100.12e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-59ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]